PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00029g00131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 544aa    MW: 62846.9 Da    PI: 8.3052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00029g00131.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07338379347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE e   + ++++G++ Wk  a ++g  + + ++k+ w+ +
  Peaxi162Scf00029g00131.1 338 KWTEEEYEMVRKFHREHGPK-WKVLADELG--KHRFHVKDTWRRL 379
                               8*****************99.********9..6788899888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-4262333IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5265352IPR009057Homeodomain-like
SMARTSM007170.55335382IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-8337397IPR009057Homeodomain-like
PROSITE profilePS500906.934338380IPR017877Myb-like domain
PfamPF139218.8E-10339397No hitNo description
Gene3DG3DSA:1.10.10.602.4E-7353391IPR009057Homeodomain-like
PROSITE profilePS500907.933381449IPR017877Myb-like domain
SuperFamilySSF466895.98E-5385449IPR009057Homeodomain-like
SMARTSM007170.021385451IPR001005SANT/Myb domain
CDDcd001670.0067389446No hitNo description
Gene3DG3DSA:1.10.10.607.6E-9392449IPR009057Homeodomain-like
SuperFamilySSF466895.25E-5429504IPR009057Homeodomain-like
PROSITE profilePS500907.131451504IPR017877Myb-like domain
SMARTSM0071789455506IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MVLGDEKEGM LRKQEKKSKK SNKKAAINGL ALTTADVKAI KGDFSFDEEK LTVVETLIQR  60
DKEEMETKAA GEIDQCGVKR KKKRGGNHLR KSNKDSDEDA AEGVEEKKHK LKKSCKDEQQ  120
TMQYAPLDTE KSAPASASET WDNDKVVETF GVVSSGNAVD EIRRKNKSKK SIKTSATSGE  180
VTNTEVNQGA VFPSIEEREE GSRTENGNIR KRKNVKLGQR PEDPIHENSE KRVRFSGHVQ  240
VFPSPNDPSD EKHEIEEETL LRGKRFSKLE DEIIKNAVHK YIEIHNMGEE GLQKILNSRS  300
HPEIKGCWKE IGSAIPYRPY ISVYYRAQVL FRRCETRKWT EEEYEMVRKF HREHGPKWKV  360
LADELGKHRF HVKDTWRRLK LSNQKKGQWT QEEYQTLFDL VNTDLRLKLS EDKKSKYGML  420
RDNIPWSAIS DKLSTRTAPS CCLKWYDQLT SPMVAKGEWA DADDYHLIDA LFVLDASCVE  480
DVDWDNLLDH RPGEICRKRW NQMVLHIDQC GNRSFAEQIE VLAKRYRPDL AEVRETWDSK  540
PIVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760244.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471261.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471262.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A0V0ISF60.0A0A0V0ISF6_SOLCH; Putative transcriptional regulator ATRX-like
STRINGPGSC0003DMT4000395060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-129MYB_related family protein